|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
136
|
194.1
|
|
115
|
55.8
|
|
251
|
249.8
|
|
|
Retrotransposons
|
128
|
155.0
|
1210.7
|
109
|
51.4
|
471.2
|
237
|
206.3
|
870.6
|
|
Transposons
|
8
|
39.1
|
4888.1
|
6
|
4.4
|
732.3
|
14
|
43.5
|
3107.1
|
|
MITEs
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
12
|
15.0
|
|
109
|
39.6
|
|
121
|
54.6
|
|
|
Centromere-specific
retrotransposons
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Centromeric
satellite repeats
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Unclassified
centromere sequences
|
12
|
15.0
|
1251.2
|
109
|
39.6
|
363.1
|
121
|
54.6
|
451.2
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
5
|
11.3
|
|
1
|
0.5
|
|
6
|
11.8
|
|
|
Telomere sequences
|
2
|
4.2
|
2115.5
|
0
|
0
|
N/A
|
2
|
4.2
|
2115.5
|
|
Telomere-associated
|
3
|
7.0
|
2350.0
|
1
|
0.5
|
499.0
|
4
|
7.5
|
1887.2
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
378
|
129.4
|
|
118
|
258.9
|
|
496
|
388.4
|
|
|
45S rDNAs
|
22
|
18.5
|
842.4
|
2
|
12.0
|
5990.0
|
24
|
30.5
|
1271.3
|
|
5S rDNAs
|
356
|
110.9
|
311.5
|
116
|
247.0
|
2129.0
|
472
|
357.9
|
758.2
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
15
|
19.2
|
|
855
|
233.4
|
|
870
|
252.6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
546
|
368.9
|
|
1198
|
588.3
|
|
1744
|
957.1
|
|