|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
565
|
791.9
|
|
123
|
87.9
|
|
688
|
879.8
|
|
|
Retrotransposons
|
240
|
613.4
|
2555.9
|
123
|
87.9
|
715.0
|
363
|
701.4
|
1932.1
|
|
Transposons
|
22
|
61.3
|
2785.8
|
0
|
0
|
N/A
|
22
|
61.3
|
2785.8
|
|
MITEs
|
303
|
117.2
|
386.7
|
0
|
0
|
N/A
|
303
|
117.2
|
386.7
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
6
|
9.3
|
|
0
|
0
|
|
6
|
9.3
|
|
|
Centromere-specific
retrotransposons
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Centromeric
satellite repeats
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Unclassified
centromere sequences
|
6
|
9.3
|
1550.3
|
0
|
0
|
N/A
|
6
|
9.3
|
1550.3
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
0
|
0
|
|
0
|
0
|
|
0
|
0
|
|
|
Telomere sequences
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Telomere-associated
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
757
|
394.8
|
|
62
|
14.7
|
|
819
|
409.5
|
|
|
45S rDNAs
|
348
|
209.6
|
602.4
|
59
|
13.4
|
227.4
|
407
|
223.0
|
548.0
|
|
5S rDNAs
|
409
|
185.2
|
452.8
|
3
|
1.3
|
421.7
|
412
|
186.5
|
452.6
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
8
|
3.8
|
|
1
|
0.3
|
|
9
|
4.1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
1336
|
1199.8
|
|
186
|
102.9
|
|
1522
|
1302.8
|
|