|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
1316
|
2996.6
|
|
20249
|
7399.2
|
|
21565
|
10395.8
|
|
|
Retrotransposons
|
776
|
2405.7
|
3100.2
|
2280
|
3209.0
|
1407.5
|
3056
|
5614.8
|
1837.3
|
|
Transposons
|
294
|
506.0
|
1721.1
|
3187
|
828.5
|
259.9
|
3481
|
1334.5
|
383.4
|
|
MITEs
|
246
|
84.8
|
344.9
|
14782
|
3361.7
|
227.4
|
15028
|
3446.6
|
229.3
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
139
|
127.0
|
|
1603
|
492.3
|
|
1742
|
619.4
|
|
|
Centromere-specific
retrotransposons
|
20
|
77.6
|
3881.4
|
256
|
277.9
|
1085.5
|
276
|
355.5
|
1288.1
|
|
Centromeric
satellite repeats
|
117
|
47.3
|
404.4
|
1335
|
203.8
|
152.6
|
1452
|
251.1
|
172.9
|
|
Unclassified
centromere sequences
|
2
|
2.1
|
1042.0
|
12
|
10.7
|
890.8
|
14
|
12.8
|
912.4
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
18
|
14.2
|
|
271
|
96.4
|
|
289
|
110.6
|
|
|
Telomere sequences
|
6
|
10.3
|
1713.5
|
0
|
0
|
N/A
|
6
|
10.3
|
1713.5
|
|
Telomere-associated
|
12
|
3.9
|
323.4
|
271
|
96.4
|
355.8
|
283
|
100.3
|
354.4
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
371
|
284.7
|
|
22
|
44.6
|
|
393
|
329.4
|
|
|
45S rDNAs
|
366
|
282.8
|
772.6
|
17
|
41.6
|
2448.7
|
383
|
324.4
|
847.0
|
|
5S rDNAs
|
5
|
2.0
|
395.8
|
5
|
3.0
|
597.0
|
10
|
5.0
|
496.4
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
55
|
23.2
|
|
922
|
275.0
|
|
977
|
298.1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
1899
|
3445.7
|
|
23067
|
8307.6
|
|
24966
|
11753.4
|
|