|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
188
|
109.4
|
|
4349
|
1532.8
|
|
4537
|
1642.2
|
|
|
Retrotransposons
|
174
|
93.7
|
538.7
|
3344
|
1253.2
|
374.8
|
3518
|
1346.9
|
382.9
|
|
Transposons
|
14
|
15.7
|
1122.6
|
1005
|
279.6
|
278.2
|
1019
|
295.3
|
289.8
|
|
MITEs
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
0
|
0
|
|
0
|
0
|
|
0
|
0
|
|
|
Centromere-specific
retrotransposons
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Centromeric
satellite repeats
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Unclassified
centromere sequences
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
2
|
3.6
|
|
194
|
37.0
|
|
196
|
40.6
|
|
|
Telomere sequences
|
1
|
2.8
|
2793.0
|
0
|
0
|
N/A
|
1
|
2.8
|
2793.0
|
|
Telomere-associated
|
1
|
0.8
|
766.0
|
194
|
37.0
|
190.8
|
195
|
37.8
|
193.8
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
166
|
81.7
|
|
144
|
75.2
|
|
310
|
156.9
|
|
|
45S rDNAs
|
69
|
50.0
|
724.7
|
81
|
69.6
|
859.8
|
150
|
119.6
|
797.6
|
|
5S rDNAs
|
97
|
31.7
|
326.7
|
63
|
5.5
|
87.7
|
160
|
37.2
|
232.6
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
15
|
21.2
|
|
1854
|
672.8
|
|
1869
|
694.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
371
|
215.9
|
|
6541
|
2317.7
|
|
6912
|
2533.6
|
|