|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
113
|
166.6
|
|
13
|
2.5
|
|
126
|
169.1
|
|
|
Retrotransposons
|
91
|
135.0
|
1483.8
|
13
|
2.5
|
191.5
|
104
|
137.5
|
1322.3
|
|
Transposons
|
14
|
28.3
|
2022.1
|
0
|
0
|
N/A
|
14
|
28.3
|
2022.1
|
|
MITEs
|
8
|
3.2
|
406.2
|
0
|
0
|
N/A
|
8
|
3.2
|
406.2
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
10
|
5.1
|
|
2
|
1.1
|
|
12
|
6.1
|
|
|
Centromere-specific
retrotransposons
|
2
|
0.6
|
310.0
|
0
|
0
|
N/A
|
2
|
0.6
|
310.0
|
|
Centromeric
satellite repeats
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Unclassified
centromere sequences
|
8
|
4.5
|
556.2
|
2
|
1.1
|
539.5
|
10
|
5.5
|
552.9
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
0
|
0
|
|
0
|
0
|
|
0
|
0
|
|
|
Telomere sequences
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
Telomere-associated
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
77
|
15.5
|
|
7
|
1.9
|
|
84
|
17.4
|
|
|
45S rDNAs
|
72
|
14.6
|
202.5
|
7
|
1.9
|
278.0
|
79
|
16.5
|
209.2
|
|
5S rDNAs
|
5
|
0.9
|
174.2
|
0
|
0
|
N/A
|
5
|
0.9
|
174.2
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
16
|
4.8
|
|
6
|
1.4
|
|
22
|
6.1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
216
|
191.9
|
|
28
|
6.9
|
|
244
|
198.6
|
|