|
Classification
|
From public databases
|
Extracted from HTGS/PLANT
|
Total
|
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
Number
|
Total length (kb)
|
Average length (bp)
|
|
Transposable
elements (total)
|
666
|
2169.8
|
|
295
|
404.8
|
|
961
|
2574.6
|
|
|
Retrotransposons
|
505
|
2006.0
|
3972.4
|
182
|
349.4
|
1919.5
|
687
|
2355.4
|
3428.5
|
|
Transposons
|
115
|
148.2
|
1288.3
|
76
|
44.4
|
584.6
|
191
|
192.6
|
1008.3
|
|
MITEs
|
46
|
15.6
|
339.3
|
37
|
11.0
|
297.9
|
83
|
26.6
|
320.9
|
|
|
|
|
|
|
|
|
|
|
|
|
Centromere-related
(total)
|
107
|
47.0
|
|
174
|
36.2
|
|
281
|
83.2
|
|
|
Centromere-specific
retrotransposons
|
0
|
0
|
N/A
|
4
|
2.0
|
504.5
|
4
|
2.0
|
504.5
|
|
Centromeric
satellite repeats
|
69
|
11.1
|
160.4
|
149
|
23.0
|
154.4
|
218
|
34.1
|
156.3
|
|
Unclassified
centromere sequences
|
38
|
35.9
|
944.6
|
21
|
11.2
|
534.3
|
59
|
47.1
|
798.6
|
|
|
|
|
|
|
|
|
|
|
|
|
Telomere-related
(total)
|
2
|
2.4
|
|
1
|
0.3
|
|
3
|
2.7
|
|
|
Telomere sequences
|
2
|
2.4
|
1205.0
|
1
|
0.3
|
311.0
|
3
|
2.7
|
907.0
|
|
Telomere-associated
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
0
|
0
|
N/A
|
|
|
|
|
|
|
|
|
|
|
|
|
rDNAs (total)
|
39
|
27.9
|
|
2
|
0.3
|
|
41
|
28.1
|
|
|
45S rDNAs
|
33
|
25.6
|
776.6
|
2
|
0.3
|
128.0
|
35
|
25.9
|
739.5
|
|
5S rDNAs
|
6
|
2.2
|
372.2
|
0
|
0
|
N/A
|
6
|
2.2
|
372.2
|
|
|
|
|
|
|
|
|
|
|
|
|
Unclassified
(total)
|
46
|
27.1
|
|
83
|
80.6
|
|
129
|
107.7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Total
|
860
|
2274.1
|
|
555
|
522.2
|
|
1415
|
2796.3
|
|